Hi Sri,
Why don't you get my book? All your questions are answered there.
Here is the link ->
http://www.apress.com/br/book/9781484214237Basically,
In the prepare phase (adop phase=prepare), the file
system gets synchronized. It is an incremental synchronization, so only the required file system objects are copied from run to patch.
When executed with phase=fs_clone, adop re-creates the patch edition file system by copying the active/run file system.